Population genomics from pool sequencing
WebJun 18, 2024 · In this study, we performed whole-genome pooled sequencing (Pool-Seq) on three populations of swan geese with wild type and white-colored feathers. By identifying genomic regions that experienced selective sweeps, we aimed to identify genes that have experienced artificial selection and thus might explain the change in feather color in …
Population genomics from pool sequencing
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WebNext generation sequencing of pooled samples is an effective approach for studies of variability and differentiation in populations. In this paper we provide a comprehensive set of estimators of the most common statistics in population genetics based on the frequency spectrum, namely the Watterson estimator , nucleotide pairwise diversity Π, Tajima's D, Fu … WebMar 31, 2024 · Pool-seq has been successfully used in various areas of research such as Genome Wide Association Studies (GWAS) 10, polymorphism discovery and allele frequency estimation 11, population ...
WebJan 10, 2024 · Pooled sequencing vs. individually barcoding samples. ... For many population genomic goals, given a set amount of sequencing to work with (e.g. 100x coverage of the target genome), it is often more advantageous to sequence more individuals (100 individuals to 1x coverage), ... WebSep 14, 2013 · Next generation sequencing of pooled samples is an effective approach for studies of variability and differentiation in populations. In this paper we provide a …
WebSep 23, 2014 · Sequencing the entire genome using Pool-seq, rather than pre-defined regions, is an unbiased approach that allows the discovery of functional differences in the absence of a well-defined genomic ... WebAug 2, 2016 · The performance of PoPoolationTE2 for Pool-Seq data from a single population is similar to other tools dedicated to TE analysis in pooled samples (TEMP [Zhuang et al. 2014], PoPoolationTE [Kofler et al. 2012], table 2).PoPoolationTE2, however, required the least computation time which facilitates the analysis of multiple samples.
WebSep 26, 2024 · Developing genomic insights is challenging in nonmodel species for which resources are often scarce and prohibitively costly. Here, we explore the potential of a …
WebOne reason is that TE abundance needs to be studied at the population level, but sequencing individuals on a population scale is still too expensive to characterize TE abundance in ... greenwell ford roadWebJan 6, 2011 · Recent statistical analyses suggest that sequencing of pooled samples provides a cost effective approach to determine genome-wide population genetic … fn wildcatWebApr 30, 2014 · Although pooled-population sequencing has become a widely used approach for estimating allele frequencies, ... Ferretti L, Ramos-Onsins SE, Pérez-Enciso M. Population genomics from pool sequencing. Mol Ecol. 2013; 22:5561–5576. [Google Scholar] Futschik A, Schlötterer C. greenwell farms kona coffee tourWebSep 1, 2024 · Whole-genome sequencing of pools of individuals is increasingly popular for population genomic research on both model and nonmodel species (Schlötterer et al. … fn wild cardWebApr 10, 2024 · In fact, numerous whole-genome sequencing studies have been published since, studying honey bee population structure and diversity 4,5,6,7,8, evolutionary history … greenwell foundation owensboro kyWebApr 8, 2024 · In 2024, the Mayo Clinic Center for Individualized Medicine set out to create a library of genomic sequencing data of 100,000 consented Mayo Clinic participants by the end of 2024 to advance research and improve patient care. The genomic sequencing study is a year ahead of the plan — reaching over 71,000 participants. "This is one of the largest … greenwell farms coffee reviewWebNov 7, 2013 · Sequencing of pooled samples (Pool-Seq) using next-generation sequencing technologies has become increasingly popular, because it represents a rapid and cost-effective method to determine allele frequencies for single nucleotide polymorphisms (SNPs) in population pools. Validation of allele frequencies determined by Pool-Seq has … fn williams sr antioch